Software packages & pipelines released as main developer or supervisor

CRAN

• nephro - R package for kidney function-related risk parameter estimation. (Nephron Clin Pract 2013)

Other packages and pipelines

• Haplomics - Snakemake pipeline for multiomics haplotype association analyses, released by Dariush Ghasemi-Semeskandeh (medRxiv 2025)

• LDExplorer - R package for fast whole-genome haplotype-block recognition, released by Daniel Taliun (BMC Bioinformatics 2014)

• GWAtoolbox - R package for fast quality control & handling of multiple GWAS datasets, released with Christian Fuchsberger & Daniel Taliun (Bioinformatics 2012)

• MATILDE - R package that implements a Bayesian method for linkage disequilibrium block identification (BMC Genomics 2008)